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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST041764
species: Brachypodium distachyon
miRNA family: MIR171
source: miRBase, original name: bdi-MIR171a (MI0011559)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 CTCGCGCGCCAGTGGAATTGCC

mismatches: 11
bulges: 3
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pre-miRNA
 GAGGTAGGAGGCGGAGCGGAGGAAAGGCTTCCCGACCGGGGGAAGCTGGTGATTGAGCCGCGCCAATATCTCTCGCGCGCCAGTGGAATTGCCGGCTTCA
GCTGCTTTCGCCGCCGCAGC

dot-bracket secondary structure
..........((((.(((((((...(((..(((....))).((((((((..(((..(((((((...........)))))...))..)))..)))))))).
))).)))))))..))))...


SIMILARITIES
miRBase osa-MIR171a: 0.000001

PMRD bdi-miR171a: 8e-64

microPC miR171: 0.0004		UniProt no hits

RFAM MIR171_1: 0.00003

Identical with: bdi-miR171a from PMRD (MNEST048311)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR

references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"



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